WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01D1.2f.2 Sequence Name  T01D1.2f.2
Length (nt)  2030   Chromosome Location  II: 163080-170630
Chromosome . Primary Identifier  II Chromosome Location . Start  163080
Chromosome Location . End  170630 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01D1.2f.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001340 etr-1 T01D1.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01D1.2f T01D1.2f 1767   II: 163142-163324

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01D1.2f.2 163080 170630 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon37783   245   II: 163080-163324 Caenorhabditis elegans
Exon37808   238   II: 164406-164643 Caenorhabditis elegans
Exon37833   126   II: 164701-164826 Caenorhabditis elegans
Exon37858   80   II: 166071-166150 Caenorhabditis elegans
Exon37878   153   II: 166753-166905 Caenorhabditis elegans
Exon37908   118   II: 166961-167078 Caenorhabditis elegans
Exon37945   144   II: 167904-168047 Caenorhabditis elegans
Exon37970   219   II: 168175-168393 Caenorhabditis elegans
Exon37983   147   II: 168543-168689 Caenorhabditis elegans
Exon38026   231   II: 168793-169023 Caenorhabditis elegans
Exon38061   130   II: 169552-169681 Caenorhabditis elegans
Exon38087   199   II: 170432-170630 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01D1.2f.2 163080 170630 1

1 Sequence

Length
2030

1 Sequence Ontology Term

Identifier Name Description
transcript