WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01D1.2g.1 Sequence Name  T01D1.2g.1
Length (nt)  2556   Chromosome Location  II: 163080-170631
Chromosome . Primary Identifier  II Chromosome Location . Start  163080
Chromosome Location . End  170631 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01D1.2g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001340 etr-1 T01D1.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01D1.2g T01D1.2g 1542   II: 163142-163324

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01D1.2g.1 163080 170631 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon37792   245   II: 163080-163324 Caenorhabditis elegans
Exon37817   238   II: 164406-164643 Caenorhabditis elegans
Exon37842   126   II: 164701-164826 Caenorhabditis elegans
Exon37867   80   II: 166071-166150 Caenorhabditis elegans
Exon37887   153   II: 166753-166905 Caenorhabditis elegans
Exon37917   118   II: 166961-167078 Caenorhabditis elegans
Exon37954   144   II: 167904-168047 Caenorhabditis elegans
Exon38007   141   II: 168549-168689 Caenorhabditis elegans
Exon38035   231   II: 168793-169023 Caenorhabditis elegans
Exon38083   1080   II: 169552-170631 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01D1.2g.1 163080 170631 1

1 Sequence

Length
2556

1 Sequence Ontology Term

Identifier Name Description
transcript