WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01D1.2m.1 Sequence Name  T01D1.2m.1
Length (nt)  1395   Chromosome Location  II: 164595-169679
Chromosome . Primary Identifier  II Chromosome Location . Start  164595
Chromosome Location . End  169679 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01D1.2m.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001340 etr-1 T01D1.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01D1.2m T01D1.2m 1395   II: 164595-164643

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01D1.2m.1 164595 169679 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon37816   49   II: 164595-164643 Caenorhabditis elegans
Exon37840   126   II: 164701-164826 Caenorhabditis elegans
Exon37865   80   II: 166071-166150 Caenorhabditis elegans
Exon37885   153   II: 166753-166905 Caenorhabditis elegans
Exon37915   118   II: 166961-167078 Caenorhabditis elegans
Exon37950   144   II: 167904-168047 Caenorhabditis elegans
Exon37974   219   II: 168175-168393 Caenorhabditis elegans
Exon37985   147   II: 168543-168689 Caenorhabditis elegans
Exon38033   231   II: 168793-169023 Caenorhabditis elegans
Exon38047   128   II: 169552-169679 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01D1.2m.1 164595 169679 1

1 Sequence

Length
1395

1 Sequence Ontology Term

Identifier Name Description
transcript