WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01D1.2n.1 Sequence Name  T01D1.2n.1
Length (nt)  1389   Chromosome Location  II: 164595-169679
Chromosome . Primary Identifier  II Chromosome Location . Start  164595
Chromosome Location . End  169679 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01D1.2n.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001340 etr-1 T01D1.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01D1.2n T01D1.2n 1389   II: 164595-164643

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01D1.2n.1 164595 169679 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon37817   49   II: 164595-164643 Caenorhabditis elegans
Exon37841   126   II: 164701-164826 Caenorhabditis elegans
Exon37866   80   II: 166071-166150 Caenorhabditis elegans
Exon37886   153   II: 166753-166905 Caenorhabditis elegans
Exon37916   118   II: 166961-167078 Caenorhabditis elegans
Exon37951   144   II: 167904-168047 Caenorhabditis elegans
Exon37975   219   II: 168175-168393 Caenorhabditis elegans
Exon38005   141   II: 168549-168689 Caenorhabditis elegans
Exon38034   231   II: 168793-169023 Caenorhabditis elegans
Exon38048   128   II: 169552-169679 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01D1.2n.1 164595 169679 1

1 Sequence

Length
1389

1 Sequence Ontology Term

Identifier Name Description
transcript