WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F48A11.1c.1 Sequence Name  F48A11.1c.1
Length (nt)  5103   Chromosome Location  II: 196985-211649
Chromosome . Primary Identifier  II Chromosome Location . Start  196985
Chromosome Location . End  211649 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48A11.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000497 chs-2 F48A11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F48A11.1c F48A11.1c 5103   II: 196985-197071

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F48A11.1c.1 196985 211649 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon38139   87   II: 196985-197071 Caenorhabditis elegans
Exon38140   189   II: 197818-198006 Caenorhabditis elegans
Exon38142   71   II: 200152-200222 Caenorhabditis elegans
Exon38148   71   II: 204185-204255 Caenorhabditis elegans
Exon38152   271   II: 205413-205683 Caenorhabditis elegans
Exon38155   286   II: 205957-206242 Caenorhabditis elegans
Exon38158   128   II: 206295-206422 Caenorhabditis elegans
Exon38161   424   II: 206832-207255 Caenorhabditis elegans
Exon38164   249   II: 207305-207553 Caenorhabditis elegans
Exon38167   155   II: 207600-207754 Caenorhabditis elegans
Exon38170   321   II: 207800-208120 Caenorhabditis elegans
Exon38173   699   II: 208169-208867 Caenorhabditis elegans
Exon38176   1256   II: 208918-210173 Caenorhabditis elegans
Exon38179   257   II: 210220-210476 Caenorhabditis elegans
Exon38182   99   II: 210523-210621 Caenorhabditis elegans
Exon38185   90   II: 210669-210758 Caenorhabditis elegans
Exon38188   113   II: 211098-211210 Caenorhabditis elegans
Exon38191   148   II: 211259-211406 Caenorhabditis elegans
Exon38193   189   II: 211461-211649 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F48A11.1c.1 196985 211649 1

1 Sequence

Length
5103

1 Sequence Ontology Term

Identifier Name Description
transcript