WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F48A11.1a.1 Sequence Name  F48A11.1a.1
Length (nt)  5523   Chromosome Location  II: 203235-211941
Chromosome . Primary Identifier  II Chromosome Location . Start  203235
Chromosome Location . End  211941 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48A11.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000497 chs-2 F48A11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F48A11.1a F48A11.1a 5007   II: 203459-203709

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F48A11.1a.1 203235 211941 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon38144   475   II: 203235-203709 Caenorhabditis elegans
Exon38146   71   II: 204185-204255 Caenorhabditis elegans
Exon38150   271   II: 205413-205683 Caenorhabditis elegans
Exon38153   286   II: 205957-206242 Caenorhabditis elegans
Exon38156   128   II: 206295-206422 Caenorhabditis elegans
Exon38159   424   II: 206832-207255 Caenorhabditis elegans
Exon38162   249   II: 207305-207553 Caenorhabditis elegans
Exon38165   155   II: 207600-207754 Caenorhabditis elegans
Exon38168   321   II: 207800-208120 Caenorhabditis elegans
Exon38171   699   II: 208169-208867 Caenorhabditis elegans
Exon38174   1256   II: 208918-210173 Caenorhabditis elegans
Exon38177   257   II: 210220-210476 Caenorhabditis elegans
Exon38180   99   II: 210523-210621 Caenorhabditis elegans
Exon38183   90   II: 210669-210758 Caenorhabditis elegans
Exon38186   113   II: 211098-211210 Caenorhabditis elegans
Exon38189   148   II: 211259-211406 Caenorhabditis elegans
Exon38194   481   II: 211461-211941 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F48A11.1a.1 203235 211941 1

1 Sequence

Length
5523

1 Sequence Ontology Term

Identifier Name Description
transcript