WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F48A11.5a.1 Sequence Name  F48A11.5a.1
Length (nt)  2157   Chromosome Location  II: 217049-220667
Chromosome . Primary Identifier  II Chromosome Location . Start  217049
Chromosome Location . End  220667 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48A11.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018586 ubxn-3 F48A11.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F48A11.5a F48A11.5a 1842   II: 217318-217518

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F48A11.5a.1 217049 220667 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon38201   470   II: 217049-217518 Caenorhabditis elegans
Exon38206   210   II: 217572-217781 Caenorhabditis elegans
Exon38212   304   II: 217831-218134 Caenorhabditis elegans
Exon38216   218   II: 218299-218516 Caenorhabditis elegans
Exon38220   135   II: 218568-218702 Caenorhabditis elegans
Exon38224   332   II: 219172-219503 Caenorhabditis elegans
Exon38229   73   II: 219863-219935 Caenorhabditis elegans
Exon38234   97   II: 220051-220147 Caenorhabditis elegans
Exon38237   215   II: 220304-220518 Caenorhabditis elegans
Exon38240   103   II: 220565-220667 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F48A11.5a.1 217049 220667 -1

1 Sequence

Length
2157

1 Sequence Ontology Term

Identifier Name Description
transcript