WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y43H11AL.3a.1 Sequence Name  Y43H11AL.3a.1
Length (nt)  6937   Chromosome Location  II: 240722-255196
Chromosome . Primary Identifier  II Chromosome Location . Start  240722
Chromosome Location . End  255196 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y43H11AL.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004166 scc-2 Y43H11AL.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y43H11AL.3a Y43H11AL.3a 6531   II: 241114-241257

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y43H11AL.3a.1 240722 255196 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon38314   536   II: 240722-241257 Caenorhabditis elegans
Exon38320   169   II: 241831-241999 Caenorhabditis elegans
Exon38323   269   II: 242049-242317 Caenorhabditis elegans
Exon38326   212   II: 242367-242578 Caenorhabditis elegans
Exon38329   259   II: 243236-243494 Caenorhabditis elegans
Exon38333   326   II: 243680-244005 Caenorhabditis elegans
Exon38335   255   II: 245056-245310 Caenorhabditis elegans
Exon38337   217   II: 245364-245580 Caenorhabditis elegans
Exon38339   321   II: 245831-246151 Caenorhabditis elegans
Exon38341   170   II: 246594-246763 Caenorhabditis elegans
Exon38343   232   II: 246850-247081 Caenorhabditis elegans
Exon38345   102   II: 247429-247530 Caenorhabditis elegans
Exon38347   216   II: 247579-247794 Caenorhabditis elegans
Exon38350   192   II: 247880-248071 Caenorhabditis elegans
Exon38352   393   II: 248122-248514 Caenorhabditis elegans
Exon38354   291   II: 249534-249824 Caenorhabditis elegans
Exon38357   215   II: 249871-250085 Caenorhabditis elegans
Exon38359   337   II: 250713-251049 Caenorhabditis elegans
Exon38361   409   II: 251441-251849 Caenorhabditis elegans
Exon38363   307   II: 251921-252227 Caenorhabditis elegans
Exon38365   377   II: 252326-252702 Caenorhabditis elegans
Exon38367   157   II: 253213-253369 Caenorhabditis elegans
Exon38369   202   II: 253675-253876 Caenorhabditis elegans
Exon38371   324   II: 254292-254615 Caenorhabditis elegans
Exon38373   231   II: 254700-254930 Caenorhabditis elegans
Exon38376   218   II: 254979-255196 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y43H11AL.3a.1 240722 255196 -1

1 Sequence

Length
6937

1 Sequence Ontology Term

Identifier Name Description
transcript