WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K01A2.11a.1 Sequence Name  K01A2.11a.1
Length (nt)  1889   Chromosome Location  II: 328588-332513
Chromosome . Primary Identifier  II Chromosome Location . Start  328588
Chromosome Location . End  332513 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K01A2.11a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019285 cbn-1 K01A2.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K01A2.11a K01A2.11a 1758   II: 328717-328728

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K01A2.11a.1 328588 332513 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon38616   141   II: 328588-328728 Caenorhabditis elegans
Exon38620   318   II: 329193-329510 Caenorhabditis elegans
Exon38624   43   II: 329939-329981 Caenorhabditis elegans
Exon38627   161   II: 330068-330228 Caenorhabditis elegans
Exon38630   93   II: 330386-330478 Caenorhabditis elegans
Exon38634   340   II: 330525-330864 Caenorhabditis elegans
Exon38639   197   II: 331184-331380 Caenorhabditis elegans
Exon38643   134   II: 331563-331696 Caenorhabditis elegans
Exon38647   178   II: 331764-331941 Caenorhabditis elegans
Exon38651   212   II: 332188-332399 Caenorhabditis elegans
Exon38656   72   II: 332442-332513 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K01A2.11a.1 328588 332513 -1

1 Sequence

Length
1889

1 Sequence Ontology Term

Identifier Name Description
transcript