WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27A1.6.1 Sequence Name  T27A1.6.1
Length (nt)  1364   Chromosome Location  II: 516024-521635
Chromosome . Primary Identifier  II Chromosome Location . Start  516024
Chromosome Location . End  521635 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27A1.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003106 mab-9 T27A1.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27A1.6 T27A1.6 1041   II: 516156-516209

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27A1.6.1 516024 521635 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon39049   186   II: 516024-516209 Caenorhabditis elegans
Exon39050   159   II: 516488-516646 Caenorhabditis elegans
Exon39051   98   II: 517310-517407 Caenorhabditis elegans
Exon39052   96   II: 519219-519314 Caenorhabditis elegans
Exon39053   178   II: 519370-519547 Caenorhabditis elegans
Exon39054   168   II: 519967-520134 Caenorhabditis elegans
Exon39055   77   II: 520179-520255 Caenorhabditis elegans
Exon39056   201   II: 520392-520592 Caenorhabditis elegans
Exon39057   201   II: 521435-521635 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27A1.6.1 516024 521635 1

1 Sequence

Length
1364

1 Sequence Ontology Term

Identifier Name Description
transcript