WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W04H10.3a.1 Sequence Name  W04H10.3a.1
Length (nt)  2228   Chromosome Location  II: 595202-602120
Chromosome . Primary Identifier  II Chromosome Location . Start  595202
Chromosome Location . End  602120 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W04H10.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003599 nhl-3 W04H10.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W04H10.3a W04H10.3a 2097   II: 595330-595479

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W04H10.3a.1 595202 602120 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon39236   278   II: 595202-595479 Caenorhabditis elegans
Exon39240   97   II: 595533-595629 Caenorhabditis elegans
Exon39245   395   II: 595778-596172 Caenorhabditis elegans
Exon39248   256   II: 596734-596989 Caenorhabditis elegans
Exon39251   192   II: 597474-597665 Caenorhabditis elegans
Exon39255   269   II: 597793-598061 Caenorhabditis elegans
Exon39257   132   II: 598253-598384 Caenorhabditis elegans
Exon39259   190   II: 599911-600100 Caenorhabditis elegans
Exon39261   113   II: 600451-600563 Caenorhabditis elegans
Exon39264   117   II: 600724-600840 Caenorhabditis elegans
Exon39265   84   II: 601122-601205 Caenorhabditis elegans
Exon39266   105   II: 602016-602120 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W04H10.3a.1 595202 602120 -1

1 Sequence

Length
2228

1 Sequence Ontology Term

Identifier Name Description
transcript