WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53A10.2a.1 Sequence Name  F53A10.2a.1
Length (nt)  2553   Chromosome Location  II: 1197374-1230782
Chromosome . Primary Identifier  II Chromosome Location . Start  1197374
Chromosome Location . End  1230782 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53A10.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018734 F53A10.2 F53A10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53A10.2a F53A10.2a 2229   II: 1197381-1197517

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53A10.2a.1 1197374 1230782 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon40481   144   II: 1197374-1197517 Caenorhabditis elegans
Exon40484   97   II: 1211077-1211173 Caenorhabditis elegans
Exon40487   78   II: 1211355-1211432 Caenorhabditis elegans
Exon40493   99   II: 1225768-1225866 Caenorhabditis elegans
Exon40501   186   II: 1226111-1226296 Caenorhabditis elegans
Exon40509   420   II: 1227098-1227517 Caenorhabditis elegans
Exon40519   246   II: 1228270-1228515 Caenorhabditis elegans
Exon40528   545   II: 1228930-1229474 Caenorhabditis elegans
Exon40538   64   II: 1229646-1229709 Caenorhabditis elegans
Exon40548   215   II: 1229762-1229976 Caenorhabditis elegans
Exon40565   459   II: 1230324-1230782 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53A10.2a.1 1197374 1230782 1

1 Sequence

Length
2553

1 Sequence Ontology Term

Identifier Name Description
transcript