WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56D12.4d.1 Sequence Name  F56D12.4d.1
Length (nt)  3100   Chromosome Location  II: 1326989-1350132
Chromosome . Primary Identifier  II Chromosome Location . Start  1326989
Chromosome Location . End  1350132 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56D12.4d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002176 jip-1 F56D12.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56D12.4d F56D12.4d 2991   II: 1327001-1327096

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F56D12.4d.1 1326989 1350132 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon40794   108   II: 1326989-1327096 Caenorhabditis elegans
Exon40798   213   II: 1327837-1328049 Caenorhabditis elegans
Exon40800   161   II: 1328667-1328827 Caenorhabditis elegans
Exon40802   158   II: 1329414-1329571 Caenorhabditis elegans
Exon40804   165   II: 1330324-1330488 Caenorhabditis elegans
Exon40806   108   II: 1331052-1331159 Caenorhabditis elegans
Exon40808   194   II: 1331243-1331436 Caenorhabditis elegans
Exon40811   299   II: 1332372-1332670 Caenorhabditis elegans
Exon40816   197   II: 1337065-1337261 Caenorhabditis elegans
Exon40821   280   II: 1337393-1337672 Caenorhabditis elegans
Exon40825   125   II: 1339686-1339810 Caenorhabditis elegans
Exon40833   267   II: 1346070-1346336 Caenorhabditis elegans
Exon40841   82   II: 1347329-1347410 Caenorhabditis elegans
Exon40845   77   II: 1347471-1347547 Caenorhabditis elegans
Exon40851   108   II: 1347596-1347703 Caenorhabditis elegans
Exon40857   209   II: 1348497-1348705 Caenorhabditis elegans
Exon40865   80   II: 1349481-1349560 Caenorhabditis elegans
Exon40871   99   II: 1349617-1349715 Caenorhabditis elegans
Exon40879   170   II: 1349963-1350132 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F56D12.4d.1 1326989 1350132 1

1 Sequence

Length
3100

1 Sequence Ontology Term

Identifier Name Description
transcript