WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56D12.4e.1 Sequence Name  F56D12.4e.1
Length (nt)  1584   Chromosome Location  II: 1337093-1350035
Chromosome . Primary Identifier  II Chromosome Location . Start  1337093
Chromosome Location . End  1350035 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56D12.4e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002176 jip-1 F56D12.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56D12.4e F56D12.4e 1584   II: 1337093-1337261

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56D12.4e.1 1337093 1350035 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon40817   169   II: 1337093-1337261 Caenorhabditis elegans
Exon40822   280   II: 1337393-1337672 Caenorhabditis elegans
Exon40826   125   II: 1339686-1339810 Caenorhabditis elegans
Exon40834   267   II: 1346070-1346336 Caenorhabditis elegans
Exon40837   97   II: 1347314-1347410 Caenorhabditis elegans
Exon40846   77   II: 1347471-1347547 Caenorhabditis elegans
Exon40852   108   II: 1347596-1347703 Caenorhabditis elegans
Exon40858   209   II: 1348497-1348705 Caenorhabditis elegans
Exon40866   80   II: 1349481-1349560 Caenorhabditis elegans
Exon40872   99   II: 1349617-1349715 Caenorhabditis elegans
Exon40875   73   II: 1349963-1350035 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56D12.4e.1 1337093 1350035 1

1 Sequence

Length
1584

1 Sequence Ontology Term

Identifier Name Description
transcript