WormMine: Gene WBGene00044425

• WormBase Gene ID: WBGene00044425
• Gene Name: F54D12.11
• Sequence Name: F54D12.11
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by rsr-2 based on tiling array studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 620

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00044425

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

25 Allele

• gk964317
• gk963801
• WBVar00098247
• WBVar01682810
• WBVar01682811
• gk133656
• gk133655
• gk133658
• WBVar01412676
• gk133657
• gk133659
• WBVar00164702
• WBVar02102721
• WBVar02017407
• WBVar01716107
• WBVar02017408
• WBVar01716108
• gk772843
• gk765690
• gk850470
• gk446027
• gk776270
• gk762695
• ttTi802
• ttTi42804

1 Chromosome

• WormBase ID: II
• Organism: Caenorhabditis elegans
• Length (nt): 15279421

1 Chromosome Location

• Feature . Primary Identifier: WBGene00044425
• Start: 1393486
• End: 1394105
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrII_1391640..1393485
• Length (nt): 1846
• Chromosome Location: II: 1391640-1393485
• Organism: Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Bacteria infection: Serratia marcescens	Genes with increased expression after 24 hours of infection by S.marcescens Fold changes shown are pathogen vs OP50.	For RNA-seq and tiling arrays, log2 fold changes between gene expression values of infected versus uninfected nematodes were calculated. For log2 fold changes > 0.00001 the values > 81.25th percentile were defined as up-regulated and for log2 fold changes < -0.00001 the values < 18.75th percentile were defined as down-regulated.	WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
Bacteria infection: Photorhabdus luminescens	Genes with increased expression after 24 hours of infection by P.lumniescens Fold changes shown are pathogen vs OP50.	For RNA-seq and tiling arrays, log2 fold changes between gene expression values of infected versus uninfected nematodes were calculated. For log2 fold changes > 0.00001 the values > 81.25th percentile were defined as up-regulated and for log2 fold changes < -0.00001 the values < 18.75th percentile were defined as down-regulated.	WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
	Genes that showed significantly decreased expression level in rsr-2(RNAi) animals comparing to in gfp(RNAi) control.	Fold change > 1.2 or < 0.8.	WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray

2 Expression Patterns

• Primary Identifier: Expr1152100
• Pattern: Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015

• Primary Identifier: Expr1026581
• Pattern: Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00044425
• Start: 1393486
• End: 1394105
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 620

1 Sequence Ontology Term