Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:F36H5.12.1 | F36H5.12.1 |
522
 |
II: 1742835-1743792 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:F36H5.12 | F36H5.12 |
522
|
II: 1742835-1743024 |
40 Allele
| Public Name |
|---|
| WBVar02124326 |
| WBVar02123182 |
| WBVar02121537 |
| gk964317 |
| gk963801 |
| WBVar02122524 |
| WBVar02120604 |
| WBVar02121124 |
| WBVar02124543 |
| WBVar02120776 |
| WBVar02121946 |
| WBVar02122773 |
| WBVar02123007 |
| h6503 |
| WBVar02122097 |
| WBVar02122433 |
| gk962685 |
| WBVar01436213 |
| WBVar01436214 |
| gk134495 |
| WBVar01717101 |
| WBVar01717102 |
| WBVar02077197 |
| gk670743 |
| gk519422 |
| gk673797 |
| gk842226 |
| WBVar00041616 |
| WBVar00041621 |
| WBVar00098499 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00206518 | 1742835 | 1743792 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrII_1743793..1744482 | 690 | II: 1743793-1744482 | Caenorhabditis elegans |
2 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly decreased expression in eat-2(ad1116) comparing to in N2 at 3-days post L4 adult hermaphrodite animals. | DESeq2(v1.14.1), fold change > 2, p-value < 0.05 | WBPaper00055354:eat-2(ad1116)_downregulated | |
| Transcripts that showed significantly decreased expression in pmt-2(RNAi) animals comparing to control animals iinjected with empty vector. | Fold-change > 1.5, ANOVA P values < 0.05. | WBPaper00055482:pmt-2(RNAi)_downregulated |
3 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr2021625 | Single cell embryonic expression. Only cell types with an expression fraction of greater 0.2 of the maximum expressed fraction are labeled (Full data can be downloaded from http://caltech.wormbase.org/pub/wormbase/datasets-published/packer2019/). The colors represent the broad cell class to which the cell type has been assigned. The size of the point is proportional to the log2 of the numbers of cells in the dataset of that cell type. Interactive visualizations are available as a web app (https://cello.shinyapps.io/celegans/) and can also be installed as an R package (https://github.com/qinzhu/VisCello.celegans). | |||
| Expr1150430 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015 | |||
| Expr2003410 | Single cell embryonic expression. Only cell types with an expression fraction of greater 0.2 of the maximum expressed fraction are labeled (Full data can be downloaded from http://caltech.wormbase.org/pub/wormbase/datasets-published/packer2019/). The colors represent the broad cell class to which the cell type has been assigned. The size of the point is proportional to the log2 of the numbers of cells in the dataset of that cell type. Interactive visualizations are available as a web app (https://cello.shinyapps.io/celegans/) and can also be installed as an R package (https://github.com/qinzhu/VisCello.celegans). |