WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00006089 Gene Name  str-22
Sequence Name  ? C08F1.7 Organism  Caenorhabditis elegans
Automated Description  Is affected by clk-1 and eat-2 based on microarray studies. Biotype  SO:0000336
Genetic Position  II :-14.3843 ±0.004045 Length (nt)  ? 1196
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00006089

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

166 Allele

Public Name
WBVar02124326
WBVar02123182
WBVar02121537
gk964317
gk963801
WBVar02122524
WBVar02120604
WBVar02121124
WBVar02124543
WBVar02120776
WBVar02121946
WBVar02122773
WBVar02123007
h12382
WBVar02122097
WBVar02122433
WBVar00091181
WBVar00091057
gk962685
gk134631
gk134635
gk134634
gk134633
gk134632
WBVar01546228
WBVar01546229
WBVar01546230
WBVar01717379
WBVar01717377
WBVar01717378

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00006089 1802107 1803302 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_1801380..1802106   727 II: 1801380-1802106 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Down-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_downregulated
  Transcripts that showed significantly increased expression in eat-2(ad465) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:eat-2(ad465)_upregulated
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_13

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00006089 1802107 1803302 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1196

1 Sequence Ontology Term