WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54A3.6b.1 Sequence Name  F54A3.6b.1
Length (nt)  1709   Chromosome Location  II: 2225817-2232452
Chromosome . Primary Identifier  II Chromosome Location . Start  2225817
Chromosome Location . End  2232452 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54A3.6b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018785 F54A3.6 F54A3.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54A3.6b F54A3.6b 594   II: 2230660-2230764

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54A3.6b.1 2225817 2232452 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon42492   208   II: 2225817-2226024 Caenorhabditis elegans
Exon42496   334   II: 2226938-2227271 Caenorhabditis elegans
Exon42501   248   II: 2229193-2229440 Caenorhabditis elegans
Exon42504   132   II: 2230411-2230542 Caenorhabditis elegans
Exon42506   177   II: 2230588-2230764 Caenorhabditis elegans
Exon42509   39   II: 2230829-2230867 Caenorhabditis elegans
Exon42512   69   II: 2231469-2231537 Caenorhabditis elegans
Exon42515   69   II: 2231693-2231761 Caenorhabditis elegans
Exon42518   70   II: 2231809-2231878 Caenorhabditis elegans
Exon42521   55   II: 2231922-2231976 Caenorhabditis elegans
Exon42524   136   II: 2232044-2232179 Caenorhabditis elegans
Exon42527   29   II: 2232229-2232257 Caenorhabditis elegans
Exon42530   143   II: 2232310-2232452 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54A3.6b.1 2225817 2232452 -1

1 Sequence

Length
1709

1 Sequence Ontology Term

Identifier Name Description
transcript