WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K09F6.3.1 Sequence Name  K09F6.3.1
Length (nt)  4289   Chromosome Location  II: 2255161-2261168
Chromosome . Primary Identifier  II Chromosome Location . Start  2255161
Chromosome Location . End  2261168 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K09F6.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019586 K09F6.3 K09F6.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K09F6.3 K09F6.3 4176   II: 2255205-2255238

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K09F6.3.1 2255161 2261168 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon42554   78   II: 2255161-2255238 Caenorhabditis elegans
Exon42555   69   II: 2255338-2255406 Caenorhabditis elegans
Exon42556   60   II: 2255455-2255514 Caenorhabditis elegans
Exon42557   2368   II: 2256277-2258644 Caenorhabditis elegans
Exon42558   341   II: 2258690-2259030 Caenorhabditis elegans
Exon42559   38   II: 2259081-2259118 Caenorhabditis elegans
Exon42560   140   II: 2259161-2259300 Caenorhabditis elegans
Exon42561   323   II: 2259349-2259671 Caenorhabditis elegans
Exon42562   142   II: 2259720-2259861 Caenorhabditis elegans
Exon42563   170   II: 2259905-2260074 Caenorhabditis elegans
Exon42564   170   II: 2260560-2260729 Caenorhabditis elegans
Exon42565   390   II: 2260779-2261168 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K09F6.3.1 2255161 2261168 1

1 Sequence

Length
4289

1 Sequence Ontology Term

Identifier Name Description
transcript