WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00255569 Gene Name  mir-8195
Sequence Name  ? F53G2.11 Organism  Caenorhabditis elegans
Biotype  SO:0001265 Genetic Position 
Length (nt)  ? 61
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00255569

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F53G2.11a F53G2.11a 22   II: 2464028-2464049
Transcript:F53G2.11b F53G2.11b 22   II: 2464067-2464088
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00000239

5 Allele

Public Name
WBVar02124326
gk964317
gk963801
WBVar01625537
WBVar01625536

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00255569 2464028 2464088 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria infection: Pseudomonas aeruginosa PA14. 24 hours of exposure. Small RNAs (21-26nt) that showed significantly decreased expression after L4 animals were exposed to P .aeruginosa strain PA14 for 24 hours. DESeq2, FDR < 0.05 WBPaper00056868:P.aeruginosa_downregulated_smallRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00255569 2464028 2464088 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
61

1 Sequence Ontology Term