WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F09D1.1.1 Sequence Name  F09D1.1.1
Length (nt)  1933   Chromosome Location  II: 2565275-2575930
Chromosome . Primary Identifier  II Chromosome Location . Start  2565275
Chromosome Location . End  2575930 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F09D1.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017280 usp-39 F09D1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F09D1.1 F09D1.1 1809   II: 2565276-2565363

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F09D1.1.1 2565275 2575930 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon43196   89   II: 2565275-2565363 Caenorhabditis elegans
Exon43197   79   II: 2565416-2565494 Caenorhabditis elegans
Exon43198   67   II: 2565543-2565609 Caenorhabditis elegans
Exon43199   93   II: 2566990-2567082 Caenorhabditis elegans
Exon43200   104   II: 2567128-2567231 Caenorhabditis elegans
Exon43201   94   II: 2567282-2567375 Caenorhabditis elegans
Exon43202   192   II: 2568949-2569140 Caenorhabditis elegans
Exon43203   99   II: 2569957-2570055 Caenorhabditis elegans
Exon43204   314   II: 2571385-2571698 Caenorhabditis elegans
Exon43205   244   II: 2572397-2572640 Caenorhabditis elegans
Exon43206   282   II: 2573436-2573717 Caenorhabditis elegans
Exon43207   276   II: 2575655-2575930 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F09D1.1.1 2565275 2575930 1

1 Sequence

Length
1933

1 Sequence Ontology Term

Identifier Name Description
transcript