WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F22E5.3.1 Sequence Name  F22E5.3.1
Length (nt)  3569   Chromosome Location  II: 2659664-2664686
Chromosome . Primary Identifier  II Chromosome Location . Start  2659664
Chromosome Location . End  2664686 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F22E5.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001546 gcy-21 F22E5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F22E5.3 F22E5.3 3492   II: 2659670-2659823

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F22E5.3.1 2659664 2664686 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon43373   160   II: 2659664-2659823 Caenorhabditis elegans
Exon43374   138   II: 2659869-2660006 Caenorhabditis elegans
Exon43375   185   II: 2660054-2660238 Caenorhabditis elegans
Exon43376   106   II: 2660283-2660388 Caenorhabditis elegans
Exon43377   102   II: 2660432-2660533 Caenorhabditis elegans
Exon43378   189   II: 2660578-2660766 Caenorhabditis elegans
Exon43379   179   II: 2661379-2661557 Caenorhabditis elegans
Exon43380   488   II: 2661601-2662088 Caenorhabditis elegans
Exon43381   142   II: 2662147-2662288 Caenorhabditis elegans
Exon43382   784   II: 2662331-2663114 Caenorhabditis elegans
Exon43383   187   II: 2663156-2663342 Caenorhabditis elegans
Exon43384   141   II: 2663385-2663525 Caenorhabditis elegans
Exon43385   124   II: 2663576-2663699 Caenorhabditis elegans
Exon43386   183   II: 2663754-2663936 Caenorhabditis elegans
Exon43387   93   II: 2663984-2664076 Caenorhabditis elegans
Exon43388   67   II: 2664121-2664187 Caenorhabditis elegans
Exon43389   301   II: 2664386-2664686 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F22E5.3.1 2659664 2664686 1

1 Sequence

Length
3569

1 Sequence Ontology Term

Identifier Name Description
transcript