WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00305110 Gene Name  F08D12.15
Sequence Name  ? F08D12.15 Organism  Caenorhabditis elegans
Automated Description  Is affected by Atrazine and fluoranthene based on microarray studies. Is predicted to encode a protein with the following domains: F-box associated; Zygotic Embryogenesis-Associated Protein; and F-box associated domain, type 2. Biotype  SO:0001217
Genetic Position  II:± Length (nt)  ? 600
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00305110

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F08D12.15.1 F08D12.15.1 600   II: 2766631-2767230
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F08D12.15 F08D12.15 600   II: 2766631-2767230

0 RNAi Result

12 Allele

Public Name
gk964317
gk963801
WBVar01718825
WBVar01765095
gk136828
WBVar01233838
gk568807
gk693487
WBVar00167772
WBVar01851083
WBVar01790521
WBVar02056949

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00305110 2766631 2767230 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_2767231..2767249   19 II: 2767231-2767249 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes that showed significant differential expressed between control and 150 mg\/L Atrazine treatment. t-test, p < 0.05. WBPaper00036123:Atrazine_regulated
  Genes that showed significant differential expressed between control and 1000 mg\/L Fluoranthene treatment. t-test, p < 0.05. WBPaper00036123:Fluoranthene_regulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00305110 2766631 2767230 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
600

1 Sequence Ontology Term