WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y110A2AL.8a.1 Sequence Name  Y110A2AL.8a.1
Length (nt)  4362   Chromosome Location  II: 2845412-2852593
Chromosome . Primary Identifier  II Chromosome Location . Start  2845412
Chromosome Location . End  2852593 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y110A2AL.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004210 ptc-3 Y110A2AL.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y110A2AL.8a Y110A2AL.8a 4077   II: 2845616-2845699

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y110A2AL.8a.1 2845412 2852593 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon43737   288   II: 2845412-2845699 Caenorhabditis elegans
Exon43740   598   II: 2845750-2846347 Caenorhabditis elegans
Exon43743   98   II: 2846395-2846492 Caenorhabditis elegans
Exon43746   726   II: 2846994-2847719 Caenorhabditis elegans
Exon43751   132   II: 2848169-2848300 Caenorhabditis elegans
Exon43754   1299   II: 2848351-2849649 Caenorhabditis elegans
Exon43757   280   II: 2849840-2850119 Caenorhabditis elegans
Exon43760   180   II: 2850167-2850346 Caenorhabditis elegans
Exon43763   116   II: 2850435-2850550 Caenorhabditis elegans
Exon43766   271   II: 2850611-2850881 Caenorhabditis elegans
Exon43769   113   II: 2851405-2851517 Caenorhabditis elegans
Exon43772   123   II: 2851584-2851706 Caenorhabditis elegans
Exon43776   138   II: 2852456-2852593 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y110A2AL.8a.1 2845412 2852593 -1

1 Sequence

Length
4362

1 Sequence Ontology Term

Identifier Name Description
transcript