WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y110A2AL.8b.1 Sequence Name  Y110A2AL.8b.1
Length (nt)  4371   Chromosome Location  II: 2845412-2852593
Chromosome . Primary Identifier  II Chromosome Location . Start  2845412
Chromosome Location . End  2852593 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y110A2AL.8b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004210 ptc-3 Y110A2AL.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y110A2AL.8b Y110A2AL.8b 4086   II: 2845616-2845699

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y110A2AL.8b.1 2845412 2852593 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon43738   288   II: 2845412-2845699 Caenorhabditis elegans
Exon43741   598   II: 2845750-2846347 Caenorhabditis elegans
Exon43744   98   II: 2846395-2846492 Caenorhabditis elegans
Exon43747   726   II: 2846994-2847719 Caenorhabditis elegans
Exon43753   141   II: 2848169-2848309 Caenorhabditis elegans
Exon43755   1299   II: 2848351-2849649 Caenorhabditis elegans
Exon43758   280   II: 2849840-2850119 Caenorhabditis elegans
Exon43761   180   II: 2850167-2850346 Caenorhabditis elegans
Exon43764   116   II: 2850435-2850550 Caenorhabditis elegans
Exon43767   271   II: 2850611-2850881 Caenorhabditis elegans
Exon43770   113   II: 2851405-2851517 Caenorhabditis elegans
Exon43773   123   II: 2851584-2851706 Caenorhabditis elegans
Exon43777   138   II: 2852456-2852593 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y110A2AL.8b.1 2845412 2852593 -1

1 Sequence

Length
4371

1 Sequence Ontology Term

Identifier Name Description
transcript