WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y110A2AL.8c.1 Sequence Name  Y110A2AL.8c.1
Length (nt)  4104   Chromosome Location  II: 2845616-2852128
Chromosome . Primary Identifier  II Chromosome Location . Start  2845616
Chromosome Location . End  2852128 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y110A2AL.8c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004210 ptc-3 Y110A2AL.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y110A2AL.8c Y110A2AL.8c 4104   II: 2845616-2845699

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y110A2AL.8c.1 2845616 2852128 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon43739   84   II: 2845616-2845699 Caenorhabditis elegans
Exon43742   598   II: 2845750-2846347 Caenorhabditis elegans
Exon43745   98   II: 2846395-2846492 Caenorhabditis elegans
Exon43748   726   II: 2846994-2847719 Caenorhabditis elegans
Exon43752   132   II: 2848169-2848300 Caenorhabditis elegans
Exon43756   1299   II: 2848351-2849649 Caenorhabditis elegans
Exon43759   280   II: 2849840-2850119 Caenorhabditis elegans
Exon43762   180   II: 2850167-2850346 Caenorhabditis elegans
Exon43765   116   II: 2850435-2850550 Caenorhabditis elegans
Exon43768   271   II: 2850611-2850881 Caenorhabditis elegans
Exon43771   113   II: 2851405-2851517 Caenorhabditis elegans
Exon43774   123   II: 2851584-2851706 Caenorhabditis elegans
Exon43775   84   II: 2852045-2852128 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y110A2AL.8c.1 2845616 2852128 -1

1 Sequence

Length
4104

1 Sequence Ontology Term

Identifier Name Description
transcript