WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00197619 Gene Name  Y110A2AL.18
Sequence Name  ? Y110A2AL.18 Organism  Caenorhabditis elegans
Automated Description  Enriched in AFD based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 53
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00197619

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y110A2AL.18 Y110A2AL.18 53   II: 2859579-2859631
 

Other

0 CDSs

0 RNAi Result

11 Allele

Public Name
gk964317
gk963801
gk963407
WBVar00248321
gk387349
gk137082
WBVar02068111
WBVar02079484
WBVar01959564
WBVar01894894
gk963408

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00197619 2859579 2859631 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_2852594..2859578   6985 II: 2852594-2859578 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Temperature Shift: 25C vs 15C for 16 hours at L4 larva stage. Transcripts that showed significantly increased expression in AFD neurons comparing to in whole animals. DESeq2, fold change > 2, FDR < 0.05. WBPaper00065158:AFD_enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00197619 2859579 2859631 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
53

1 Sequence Ontology Term