WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023203 Gene Name  Y110A2AL.t1
Sequence Name  ? Y110A2AL.t1 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 based on RNA-seq studies. Biotype  SO:0001272
Genetic Position  :± Length (nt)  ? 82
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023203

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y110A2AL.t1 Y110A2AL.t1 82   II: 2860342-2860423
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00040793

6 Allele

Public Name
gk964317
gk963801
gk963407
gk963408
gk904382
gk895427

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00023203 2860342 2860423 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_2860424..2861549   1126 II: 2860424-2861549 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00023203 2860342 2860423 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
82

1 Sequence Ontology Term