WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K08A2.5a.1 Sequence Name  K08A2.5a.1
Length (nt)  2970   Chromosome Location  II: 2976639-2987023
Chromosome . Primary Identifier  II Chromosome Location . Start  2976639
Chromosome Location . End  2987023 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K08A2.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003678 nhr-88 K08A2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K08A2.5a K08A2.5a 1782   II: 2978425-2978489

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K08A2.5a.1 2976639 2987023 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon44023   82   II: 2976639-2976720 Caenorhabditis elegans
Exon44025   74   II: 2978416-2978489 Caenorhabditis elegans
Exon44028   98   II: 2978905-2979002 Caenorhabditis elegans
Exon44033   455   II: 2979575-2980029 Caenorhabditis elegans
Exon44039   278   II: 2983203-2983480 Caenorhabditis elegans
Exon44042   196   II: 2983817-2984012 Caenorhabditis elegans
Exon44044   81   II: 2984524-2984604 Caenorhabditis elegans
Exon44046   105   II: 2985273-2985377 Caenorhabditis elegans
Exon44048   1601   II: 2985423-2987023 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K08A2.5a.1 2976639 2987023 1

1 Sequence

Length
2970

1 Sequence Ontology Term

Identifier Name Description
transcript