WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y25C1A.9a.1 Sequence Name  Y25C1A.9a.1
Length (nt)  954   Chromosome Location  II: 3088474-3091296
Chromosome . Primary Identifier  II Chromosome Location . Start  3088474
Chromosome Location . End  3091296 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y25C1A.9a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00005178 srg-21 Y25C1A.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y25C1A.9a Y25C1A.9a 954   II: 3088474-3088650

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y25C1A.9a.1 3088474 3091296 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

5 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon44238   177   II: 3088474-3088650 Caenorhabditis elegans
Exon44240   183   II: 3089772-3089954 Caenorhabditis elegans
Exon44242   144   II: 3089999-3090142 Caenorhabditis elegans
Exon44244   219   II: 3090191-3090409 Caenorhabditis elegans
Exon44246   231   II: 3091066-3091296 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y25C1A.9a.1 3088474 3091296 -1

1 Sequence

Length
954

1 Sequence Ontology Term

Identifier Name Description
transcript