WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C17F4.6a.1 Sequence Name  C17F4.6a.1
Length (nt)  3708   Chromosome Location  II: 3250975-3259354
Chromosome . Primary Identifier  II Chromosome Location . Start  3250975
Chromosome Location . End  3259354 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C17F4.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001544 gcy-19 C17F4.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C17F4.6a C17F4.6a 3546   II: 3251082-3251255

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C17F4.6a.1 3250975 3259354 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon44559   281   II: 3250975-3251255 Caenorhabditis elegans
Exon44562   153   II: 3251413-3251565 Caenorhabditis elegans
Exon44565   98   II: 3251649-3251746 Caenorhabditis elegans
Exon44568   203   II: 3252161-3252363 Caenorhabditis elegans
Exon44571   140   II: 3252423-3252562 Caenorhabditis elegans
Exon44574   124   II: 3252816-3252939 Caenorhabditis elegans
Exon44577   233   II: 3253136-3253368 Caenorhabditis elegans
Exon44580   86   II: 3253417-3253502 Caenorhabditis elegans
Exon44583   373   II: 3253674-3254046 Caenorhabditis elegans
Exon44586   370   II: 3254116-3254485 Caenorhabditis elegans
Exon44589   206   II: 3254937-3255142 Caenorhabditis elegans
Exon44592   128   II: 3255244-3255371 Caenorhabditis elegans
Exon44595   139   II: 3255467-3255605 Caenorhabditis elegans
Exon44598   126   II: 3255666-3255791 Caenorhabditis elegans
Exon44602   89   II: 3256307-3256395 Caenorhabditis elegans
Exon44605   42   II: 3256576-3256617 Caenorhabditis elegans
Exon44608   123   II: 3257052-3257174 Caenorhabditis elegans
Exon44611   236   II: 3257235-3257470 Caenorhabditis elegans
Exon44614   133   II: 3257517-3257649 Caenorhabditis elegans
Exon44617   110   II: 3257695-3257804 Caenorhabditis elegans
Exon44620   131   II: 3258748-3258878 Caenorhabditis elegans
Exon44625   184   II: 3259171-3259354 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C17F4.6a.1 3250975 3259354 -1

1 Sequence

Length
3708

1 Sequence Ontology Term

Identifier Name Description
transcript