WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C17F4.6a.1 Sequence Name  C17F4.6a.1
Length (nt)  3708   Chromosome Location  II: 3250975-3259354
Chromosome . Primary Identifier  II Chromosome Location . Start  3250975
Chromosome Location . End  3259354 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C17F4.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001544 gcy-19 C17F4.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C17F4.6a C17F4.6a 3546   II: 3251082-3251255

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C17F4.6a.1 3250975 3259354 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon44566   281   II: 3250975-3251255 Caenorhabditis elegans
Exon44569   153   II: 3251413-3251565 Caenorhabditis elegans
Exon44572   98   II: 3251649-3251746 Caenorhabditis elegans
Exon44575   203   II: 3252161-3252363 Caenorhabditis elegans
Exon44578   140   II: 3252423-3252562 Caenorhabditis elegans
Exon44581   124   II: 3252816-3252939 Caenorhabditis elegans
Exon44584   233   II: 3253136-3253368 Caenorhabditis elegans
Exon44587   86   II: 3253417-3253502 Caenorhabditis elegans
Exon44590   373   II: 3253674-3254046 Caenorhabditis elegans
Exon44593   370   II: 3254116-3254485 Caenorhabditis elegans
Exon44596   206   II: 3254937-3255142 Caenorhabditis elegans
Exon44599   128   II: 3255244-3255371 Caenorhabditis elegans
Exon44602   139   II: 3255467-3255605 Caenorhabditis elegans
Exon44605   126   II: 3255666-3255791 Caenorhabditis elegans
Exon44609   89   II: 3256307-3256395 Caenorhabditis elegans
Exon44612   42   II: 3256576-3256617 Caenorhabditis elegans
Exon44615   123   II: 3257052-3257174 Caenorhabditis elegans
Exon44618   236   II: 3257235-3257470 Caenorhabditis elegans
Exon44621   133   II: 3257517-3257649 Caenorhabditis elegans
Exon44624   110   II: 3257695-3257804 Caenorhabditis elegans
Exon44627   131   II: 3258748-3258878 Caenorhabditis elegans
Exon44632   184   II: 3259171-3259354 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C17F4.6a.1 3250975 3259354 -1

1 Sequence

Length
3708

1 Sequence Ontology Term

Identifier Name Description
transcript