WormMine: Gene WBGene00271716

• WormBase Gene ID: WBGene00271716
• Gene Name: F39E9.28
• Sequence Name: F39E9.28
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by hda-2 and ilc-17.1 based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 1705

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00271716

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

84 Allele

• gk964317
• gk963801
• gk963053
• WBVar02122302
• WBVar02120456
• WBVar02123019
• WBVar02122780
• WBVar02122532
• WBVar02124390
• WBVar02122098
• WBVar02122355
• WBVar02124673
• WBVar02120786
• WBVar02120617
• WBVar02121131
• WBVar02123186
• WBVar02123659
• WBVar02121370
• WBVar02122914
• WBVar02122218
• WBVar02121721
• gk964209
• gk964210
• WBVar02124763
• WBVar02121950
• WBVar02120928
• tm10837
• WBVar02121547
• WBVar01695277
• otn1322

1 Chromosome

• WormBase ID: II
• Organism: Caenorhabditis elegans
• Length (nt): 15279421

1 Chromosome Location

• Feature . Primary Identifier: WBGene00271716
• Start: 3304070
• End: 3305774
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrII_3303751..3304069
• Length (nt): 319
• Chromosome Location: II: 3303751-3304069
• Organism: Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
	Transcripts that showed significantly increased expression in hda-2(ok1479) comparing to in N2 animals.	DESeq2 (version 1.28.1), FDR < 0.01, fold change > 2.	WBPaper00062159:hda-2(ok1479)_upregulated
	Transcripts that showed significantly decreased expression in day 1 adult hermaphrodite comparing to in L4 larva fem-3(q20) animals.	Fold change > 2, FDR < 0.05	WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
	Transcripts that showed significantly decreased expression in lin-53(RNAi) embryos comparing to control animals.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00067044:lin-53(RNAi)_downregulated
	Transcripts that showed significantly decreased expression in L1 neural cells comparing to in adult neural cells.	DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction.	WBPaper00060811:L1_vs_adult_downregulated_neural
Transgeneration hypoxia treatment.	Transcripts that are significantly downregulated in F1 animals after P0 parents were exposed to 0.1% oxygen for 16 hours at L4 larva stage.	For calling the significant differentially expressed genes (DEGs),the false discovery rate (FDR) after multiple testing correction was set as 0.05 and analyzed in edgeR.	WBPaper00064871:hypoxia_downregulated_F1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00271716
• Start: 3304070
• End: 3305774
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1705

1 Sequence Ontology Term