WormMine: Gene WBGene00170626

• WormBase Gene ID: WBGene00170626
• Gene Name: 21ur-8285
• Sequence Name: Y49F6C.10
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including srbc-48; glh-4; and glh-1 based on RNA-seq studies.
• Biotype: SO:0001638
• Genetic Position: II :-6.40652±
• Length (nt): 21

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00170626

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y49F6C.10	Y49F6C.10	21	II: 3373666-3373686

Other

0 CDSs

0 RNAi Result

28 Allele

• gk964317
• gk963801
• gk963053
• WBVar02122302
• WBVar02120456
• WBVar02123019
• WBVar02122780
• WBVar02122532
• WBVar02124390
• WBVar02122098
• WBVar02122355
• WBVar02124673
• WBVar02120617
• WBVar02121131
• WBVar02123186
• WBVar02123659
• WBVar02121370
• WBVar02122914
• WBVar02122218
• WBVar02121721
• WBVar02124763
• WBVar02121950
• WBVar02121844
• WBVar02124875
• WBVar02121550
• WBVar02120787
• tm11430
• WBVar02120929

1 Chromosome

• WormBase ID: II
• Organism: Caenorhabditis elegans
• Length (nt): 15279421

1 Chromosome Location

• Feature . Primary Identifier: WBGene00170626
• Start: 3373666
• End: 3373686
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

6 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Osmotic stress	Transcripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when food was present	DESeq(version 1.10.1), FDR < 0.05.	WBPaper00050726:OsmoticStress_regulated_Food
	Transcripts that showed significantly increased expression in srbc-48(ac23);kyIs262;fer-1(b232ts) comparing to in kyIs262;fer-1(b232ts), 24h after infection with P.aeruginosa.	DESeq2, FDR <0.05, fold change > 2.	WBPaper00059664:srbc-48(ac23)_upregulated
	Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(+), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.	DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2.	WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
	Transcripts that showed significantly decreased expression in day 3 adult hermaphrodite comparing to in L4 larva fem-3(q20) animals.	Fold change > 2, FDR < 0.05	WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
	Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
Heat Shock: 35C 4 hours at L4 larva stage.	piRNAs that showed significantly increased expression after L4 larva N2 animals were heat stressed at 35C for 4 hours	DESeq2	WBPaper00057154:HeatShock_upregulated_piRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00170626
• Start: 3373666
• End: 3373686
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 21

1 Sequence Ontology Term