WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T06D4.1a.1 Sequence Name  T06D4.1a.1
Length (nt)  1559   Chromosome Location  II: 3381836-3384020
Chromosome . Primary Identifier  II Chromosome Location . Start  3381836
Chromosome Location . End  3384020 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T06D4.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020290 T06D4.1 T06D4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T06D4.1a T06D4.1a 1326   II: 3381836-3381928

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T06D4.1a.1 3381836 3384020 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon44946   93   II: 3381836-3381928 Caenorhabditis elegans
Exon44948   261   II: 3381974-3382234 Caenorhabditis elegans
Exon44956   102   II: 3382476-3382577 Caenorhabditis elegans
Exon44960   78   II: 3382626-3382703 Caenorhabditis elegans
Exon44966   78   II: 3382752-3382829 Caenorhabditis elegans
Exon44972   96   II: 3382879-3382974 Caenorhabditis elegans
Exon44978   219   II: 3383024-3383242 Caenorhabditis elegans
Exon44984   96   II: 3383290-3383385 Caenorhabditis elegans
Exon44990   207   II: 3383435-3383641 Caenorhabditis elegans
Exon44999   329   II: 3383692-3384020 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T06D4.1a.1 3381836 3384020 1

1 Sequence

Length
1559

1 Sequence Ontology Term

Identifier Name Description
transcript