WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y49F6B.9a.1 Sequence Name  Y49F6B.9a.1
Length (nt)  1416   Chromosome Location  II: 3493907-3499387
Chromosome . Primary Identifier  II Chromosome Location . Start  3493907
Chromosome Location . End  3499387 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y49F6B.9a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021721 Y49F6B.9 Y49F6B.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y49F6B.9a Y49F6B.9a 1269   II: 3494047-3494330

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y49F6B.9a.1 3493907 3499387 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon45304   424   II: 3493907-3494330 Caenorhabditis elegans
Exon45306   204   II: 3495237-3495440 Caenorhabditis elegans
Exon45308   93   II: 3495936-3496028 Caenorhabditis elegans
Exon45310   120   II: 3496079-3496198 Caenorhabditis elegans
Exon45314   161   II: 3497404-3497564 Caenorhabditis elegans
Exon45316   111   II: 3497613-3497723 Caenorhabditis elegans
Exon45318   86   II: 3498659-3498744 Caenorhabditis elegans
Exon45321   114   II: 3498799-3498912 Caenorhabditis elegans
Exon45322   51   II: 3499234-3499284 Caenorhabditis elegans
Exon45323   52   II: 3499336-3499387 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y49F6B.9a.1 3493907 3499387 -1

1 Sequence

Length
1416

1 Sequence Ontology Term

Identifier Name Description
transcript