WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y49F6B.1c.1 Sequence Name  Y49F6B.1c.1
Length (nt)  1011   Chromosome Location  II: 3505019-3509449
Chromosome . Primary Identifier  II Chromosome Location . Start  3505019
Chromosome Location . End  3509449 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y49F6B.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021714 cyh-1 Y49F6B.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y49F6B.1c Y49F6B.1c 1011   II: 3505019-3505090

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y49F6B.1c.1 3505019 3509449 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

8 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon45334   72   II: 3505019-3505090 Caenorhabditis elegans
Exon45341   119   II: 3505535-3505653 Caenorhabditis elegans
Exon45347   109   II: 3506074-3506182 Caenorhabditis elegans
Exon45353   83   II: 3506633-3506715 Caenorhabditis elegans
Exon45359   105   II: 3506760-3506864 Caenorhabditis elegans
Exon45365   182   II: 3507428-3507609 Caenorhabditis elegans
Exon45370   127   II: 3508470-3508596 Caenorhabditis elegans
Exon45375   214   II: 3509236-3509449 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y49F6B.1c.1 3505019 3509449 1

1 Sequence

Length
1011

1 Sequence Ontology Term

Identifier Name Description
transcript