WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W09G10.4a.1 Sequence Name  W09G10.4a.1
Length (nt)  4129   Chromosome Location  II: 3532527-3546431
Chromosome . Primary Identifier  II Chromosome Location . Start  3532527
Chromosome Location . End  3546431 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W09G10.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000162 apd-3 W09G10.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W09G10.4a W09G10.4a 3756   II: 3532890-3532982

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W09G10.4a.1 3532527 3546431 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon45432   456   II: 3532527-3532982 Caenorhabditis elegans
Exon45434   297   II: 3533515-3533811 Caenorhabditis elegans
Exon45436   126   II: 3534567-3534692 Caenorhabditis elegans
Exon45438   336   II: 3535050-3535385 Caenorhabditis elegans
Exon45440   390   II: 3537006-3537395 Caenorhabditis elegans
Exon45442   369   II: 3538336-3538704 Caenorhabditis elegans
Exon45444   661   II: 3540149-3540809 Caenorhabditis elegans
Exon45446   167   II: 3541102-3541268 Caenorhabditis elegans
Exon45448   461   II: 3542613-3543073 Caenorhabditis elegans
Exon45450   124   II: 3543742-3543865 Caenorhabditis elegans
Exon45452   367   II: 3544569-3544935 Caenorhabditis elegans
Exon45454   84   II: 3545761-3545844 Caenorhabditis elegans
Exon45455   89   II: 3545954-3546042 Caenorhabditis elegans
Exon45456   96   II: 3546179-3546274 Caenorhabditis elegans
Exon45457   106   II: 3546326-3546431 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W09G10.4a.1 3532527 3546431 -1

1 Sequence

Length
4129

1 Sequence Ontology Term

Identifier Name Description
transcript