WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y8A9A.2.1 Sequence Name  Y8A9A.2.1
Length (nt)  4181   Chromosome Location  II: 3795623-3800632
Chromosome . Primary Identifier  II Chromosome Location . Start  3795623
Chromosome Location . End  3800632 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y8A9A.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021171 Y8A9A.2 Y8A9A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y8A9A.2 Y8A9A.2 4077   II: 3795623-3795736

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y8A9A.2.1 3795623 3800632 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon46124   114   II: 3795623-3795736 Caenorhabditis elegans
Exon46125   90   II: 3795782-3795871 Caenorhabditis elegans
Exon46126   195   II: 3795919-3796113 Caenorhabditis elegans
Exon46127   118   II: 3796159-3796276 Caenorhabditis elegans
Exon46128   1288   II: 3796345-3797632 Caenorhabditis elegans
Exon46129   118   II: 3797679-3797796 Caenorhabditis elegans
Exon46130   225   II: 3797844-3798068 Caenorhabditis elegans
Exon46131   207   II: 3798115-3798321 Caenorhabditis elegans
Exon46132   182   II: 3798367-3798548 Caenorhabditis elegans
Exon46133   288   II: 3798597-3798884 Caenorhabditis elegans
Exon46134   300   II: 3798930-3799229 Caenorhabditis elegans
Exon46135   118   II: 3799276-3799393 Caenorhabditis elegans
Exon46136   176   II: 3799442-3799617 Caenorhabditis elegans
Exon46137   173   II: 3799670-3799842 Caenorhabditis elegans
Exon46138   121   II: 3799893-3800013 Caenorhabditis elegans
Exon46139   121   II: 3800058-3800178 Caenorhabditis elegans
Exon46140   128   II: 3800228-3800355 Caenorhabditis elegans
Exon46141   219   II: 3800414-3800632 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y8A9A.2.1 3795623 3800632 1

1 Sequence

Length
4181

1 Sequence Ontology Term

Identifier Name Description
transcript