WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08H4.1b.2 Sequence Name  T08H4.1b.2
Length (nt)  3512   Chromosome Location  II: 4107219-4127529
Chromosome . Primary Identifier  II Chromosome Location . Start  4107219
Chromosome Location . End  4127529 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08H4.1b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006476 rhgf-2 T08H4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08H4.1b T08H4.1b 3024   II: 4109286-4109375

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08H4.1b.2 4107219 4127529 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon46797   412   II: 4107219-4107630 Caenorhabditis elegans
Exon46805   166   II: 4109210-4109375 Caenorhabditis elegans
Exon46814   142   II: 4111906-4112047 Caenorhabditis elegans
Exon46822   123   II: 4112482-4112604 Caenorhabditis elegans
Exon46832   131   II: 4120257-4120387 Caenorhabditis elegans
Exon46841   80   II: 4121113-4121192 Caenorhabditis elegans
Exon46850   378   II: 4121965-4122342 Caenorhabditis elegans
Exon46859   268   II: 4122395-4122662 Caenorhabditis elegans
Exon46868   96   II: 4122733-4122828 Caenorhabditis elegans
Exon46877   784   II: 4123244-4124027 Caenorhabditis elegans
Exon46886   647   II: 4124421-4125067 Caenorhabditis elegans
Exon46895   108   II: 4125112-4125219 Caenorhabditis elegans
Exon46904   167   II: 4125277-4125443 Caenorhabditis elegans
Exon46908   10   II: 4127520-4127529 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08H4.1b.2 4107219 4127529 1

1 Sequence

Length
3512

1 Sequence Ontology Term

Identifier Name Description
transcript