WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08H4.1a.2 Sequence Name  T08H4.1a.2
Length (nt)  3420   Chromosome Location  II: 4109210-4127849
Chromosome . Primary Identifier  II Chromosome Location . Start  4109210
Chromosome Location . End  4127849 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08H4.1a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006476 rhgf-2 T08H4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08H4.1a T08H4.1a 2589   II: 4120337-4120387

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08H4.1a.2 4109210 4127849 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon46807   166   II: 4109210-4109375 Caenorhabditis elegans
Exon46810   142   II: 4111906-4112047 Caenorhabditis elegans
Exon46818   123   II: 4112482-4112604 Caenorhabditis elegans
Exon46828   131   II: 4120257-4120387 Caenorhabditis elegans
Exon46836   80   II: 4121113-4121192 Caenorhabditis elegans
Exon46845   378   II: 4121965-4122342 Caenorhabditis elegans
Exon46854   268   II: 4122395-4122662 Caenorhabditis elegans
Exon46863   96   II: 4122733-4122828 Caenorhabditis elegans
Exon46872   784   II: 4123244-4124027 Caenorhabditis elegans
Exon46881   647   II: 4124421-4125067 Caenorhabditis elegans
Exon46890   108   II: 4125112-4125219 Caenorhabditis elegans
Exon46899   167   II: 4125277-4125443 Caenorhabditis elegans
Exon46912   330   II: 4127520-4127849 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08H4.1a.2 4109210 4127849 1

1 Sequence

Length
3420

1 Sequence Ontology Term

Identifier Name Description
transcript