WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F31D5.3a.1 Sequence Name  F31D5.3a.1
Length (nt)  3518   Chromosome Location  II: 4186666-4208498
Chromosome . Primary Identifier  II Chromosome Location . Start  4186666
Chromosome Location . End  4208498 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F31D5.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006495 cpna-1 F31D5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F31D5.3a F31D5.3a 3276   II: 4186676-4186930

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F31D5.3a.1 4186666 4208498 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon46973   265   II: 4186666-4186930 Caenorhabditis elegans
Exon46975   152   II: 4186972-4187123 Caenorhabditis elegans
Exon46978   681   II: 4187468-4188148 Caenorhabditis elegans
Exon46981   189   II: 4188210-4188398 Caenorhabditis elegans
Exon46984   66   II: 4188901-4188966 Caenorhabditis elegans
Exon47023   920   II: 4204831-4205750 Caenorhabditis elegans
Exon47025   38   II: 4206002-4206039 Caenorhabditis elegans
Exon47028   603   II: 4206643-4207245 Caenorhabditis elegans
Exon47030   138   II: 4207294-4207431 Caenorhabditis elegans
Exon47032   146   II: 4207892-4208037 Caenorhabditis elegans
Exon47034   320   II: 4208179-4208498 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F31D5.3a.1 4186666 4208498 1

1 Sequence

Length
3518

1 Sequence Ontology Term

Identifier Name Description
transcript