WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F31D5.3b.1 Sequence Name  F31D5.3b.1
Length (nt)  3558   Chromosome Location  II: 4186676-4208500
Chromosome . Primary Identifier  II Chromosome Location . Start  4186676
Chromosome Location . End  4208500 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F31D5.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006495 cpna-1 F31D5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F31D5.3b F31D5.3b 3324   II: 4186676-4186930

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F31D5.3b.1 4186676 4208500 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon46974   255   II: 4186676-4186930 Caenorhabditis elegans
Exon46976   152   II: 4186972-4187123 Caenorhabditis elegans
Exon46979   681   II: 4187468-4188148 Caenorhabditis elegans
Exon46982   189   II: 4188210-4188398 Caenorhabditis elegans
Exon46985   66   II: 4188901-4188966 Caenorhabditis elegans
Exon47024   920   II: 4204831-4205750 Caenorhabditis elegans
Exon47026   38   II: 4206002-4206039 Caenorhabditis elegans
Exon47027   48   II: 4206220-4206267 Caenorhabditis elegans
Exon47029   603   II: 4206643-4207245 Caenorhabditis elegans
Exon47031   138   II: 4207294-4207431 Caenorhabditis elegans
Exon47033   146   II: 4207892-4208037 Caenorhabditis elegans
Exon47035   322   II: 4208179-4208500 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F31D5.3b.1 4186676 4208500 1

1 Sequence

Length
3558

1 Sequence Ontology Term

Identifier Name Description
transcript