WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C16A11.5e.1 Sequence Name  C16A11.5e.1
Length (nt)  1860   Chromosome Location  II: 4223314-4226253
Chromosome . Primary Identifier  II Chromosome Location . Start  4223314
Chromosome Location . End  4226253 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C16A11.5e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015818 C16A11.5 C16A11.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16A11.5e C16A11.5e 1860   II: 4223314-4223418

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C16A11.5e.1 4223314 4226253 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon47077   105   II: 4223314-4223418 Caenorhabditis elegans
Exon47092   109   II: 4223480-4223588 Caenorhabditis elegans
Exon47098   35   II: 4223652-4223686 Caenorhabditis elegans
Exon47118   105   II: 4223804-4223908 Caenorhabditis elegans
Exon47133   165   II: 4223967-4224131 Caenorhabditis elegans
Exon47138   87   II: 4224190-4224276 Caenorhabditis elegans
Exon47150   159   II: 4224280-4224438 Caenorhabditis elegans
Exon47174   324   II: 4224957-4225280 Caenorhabditis elegans
Exon47189   353   II: 4225327-4225679 Caenorhabditis elegans
Exon47204   105   II: 4225730-4225834 Caenorhabditis elegans
Exon47219   75   II: 4225890-4225964 Caenorhabditis elegans
Exon47220   238   II: 4226016-4226253 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C16A11.5e.1 4223314 4226253 1

1 Sequence

Length
1860

1 Sequence Ontology Term

Identifier Name Description
transcript