WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05C1.4a.1 Sequence Name  T05C1.4a.1
Length (nt)  3774   Chromosome Location  II: 4491152-4505147
Chromosome . Primary Identifier  II Chromosome Location . Start  4491152
Chromosome Location . End  4505147 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05C1.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020251 camt-1 T05C1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05C1.4a T05C1.4a 3558   II: 4491368-4491504

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T05C1.4a.1 4491152 4505147 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon47843   353   II: 4491152-4491504 Caenorhabditis elegans
Exon47844   103   II: 4491677-4491779 Caenorhabditis elegans
Exon47847   34   II: 4492087-4492120 Caenorhabditis elegans
Exon47848   224   II: 4492205-4492428 Caenorhabditis elegans
Exon47852   215   II: 4492611-4492825 Caenorhabditis elegans
Exon47856   83   II: 4500098-4500180 Caenorhabditis elegans
Exon47858   77   II: 4500492-4500568 Caenorhabditis elegans
Exon47860   79   II: 4500666-4500744 Caenorhabditis elegans
Exon47862   598   II: 4501005-4501602 Caenorhabditis elegans
Exon47864   409   II: 4501712-4502120 Caenorhabditis elegans
Exon47866   138   II: 4502170-4502307 Caenorhabditis elegans
Exon47868   542   II: 4502383-4502924 Caenorhabditis elegans
Exon47870   228   II: 4503194-4503421 Caenorhabditis elegans
Exon47872   145   II: 4503467-4503611 Caenorhabditis elegans
Exon47874   199   II: 4503762-4503960 Caenorhabditis elegans
Exon47876   86   II: 4504136-4504221 Caenorhabditis elegans
Exon47878   102   II: 4504320-4504421 Caenorhabditis elegans
Exon47880   159   II: 4504989-4505147 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T05C1.4a.1 4491152 4505147 -1

1 Sequence

Length
3774

1 Sequence Ontology Term

Identifier Name Description
transcript