WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M03A1.1.1 Sequence Name  M03A1.1.1
Length (nt)  3901   Chromosome Location  II: 4572000-4590970
Chromosome . Primary Identifier  II Chromosome Location . Start  4572000
Chromosome Location . End  4590970 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M03A1.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006868 vab-1 M03A1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M03A1.1 M03A1.1 3354   II: 4572089-4572182

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M03A1.1.1 4572000 4590970 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon47987   183   II: 4572000-4572182 Caenorhabditis elegans
Exon47988   80   II: 4574122-4574201 Caenorhabditis elegans
Exon47990   143   II: 4578121-4578263 Caenorhabditis elegans
Exon47991   301   II: 4579049-4579349 Caenorhabditis elegans
Exon47992   250   II: 4582473-4582722 Caenorhabditis elegans
Exon47993   150   II: 4586259-4586408 Caenorhabditis elegans
Exon47994   786   II: 4586463-4587248 Caenorhabditis elegans
Exon47995   99   II: 4588139-4588237 Caenorhabditis elegans
Exon47996   626   II: 4589009-4589634 Caenorhabditis elegans
Exon47997   1283   II: 4589688-4590970 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M03A1.1.1 4572000 4590970 1

1 Sequence

Length
3901

1 Sequence Ontology Term

Identifier Name Description
transcript