WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R05F9.12.1 Sequence Name  R05F9.12.1
Length (nt)  2986   Chromosome Location  II: 4914494-4925248
Chromosome . Primary Identifier  II Chromosome Location . Start  4914494
Chromosome Location . End  4925248 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R05F9.12.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019895 aagr-2 R05F9.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R05F9.12 R05F9.12 2868   II: 4914608-4914919

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R05F9.12.1 4914494 4925248 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon48773   426   II: 4914494-4914919 Caenorhabditis elegans
Exon48774   233   II: 4914967-4915199 Caenorhabditis elegans
Exon48776   281   II: 4917364-4917644 Caenorhabditis elegans
Exon48777   114   II: 4917688-4917801 Caenorhabditis elegans
Exon48778   96   II: 4917855-4917950 Caenorhabditis elegans
Exon48779   794   II: 4922263-4923056 Caenorhabditis elegans
Exon48780   465   II: 4923761-4924225 Caenorhabditis elegans
Exon48781   241   II: 4924271-4924511 Caenorhabditis elegans
Exon48782   188   II: 4924838-4925025 Caenorhabditis elegans
Exon48783   148   II: 4925101-4925248 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R05F9.12.1 4914494 4925248 -1

1 Sequence

Length
2986

1 Sequence Ontology Term

Identifier Name Description
transcript