WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK546.1a.3 Sequence Name  ZK546.1a.3
Length (nt)  2939   Chromosome Location  II: 4949902-4953478
Chromosome . Primary Identifier  II Chromosome Location . Start  4949902
Chromosome Location . End  4953478 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK546.1a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006997 zyg-12 ZK546.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK546.1a ZK546.1a 2211   II: 4949911-4950069

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK546.1a.3 4949902 4953478 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon48854   168   II: 4949902-4950069 Caenorhabditis elegans
Exon48859   89   II: 4950118-4950206 Caenorhabditis elegans
Exon48867   1181   II: 4950257-4951437 Caenorhabditis elegans
Exon48875   64   II: 4951484-4951547 Caenorhabditis elegans
Exon48883   418   II: 4951592-4952009 Caenorhabditis elegans
Exon48891   180   II: 4952060-4952239 Caenorhabditis elegans
Exon48899   110   II: 4952283-4952392 Caenorhabditis elegans
Exon48907   42   II: 4952490-4952531 Caenorhabditis elegans
Exon48911   48   II: 4952647-4952694 Caenorhabditis elegans
Exon48913   639   II: 4952840-4953478 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK546.1a.3 4949902 4953478 1

1 Sequence

Length
2939

1 Sequence Ontology Term

Identifier Name Description
transcript