WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38A8.3a.1 Sequence Name  Y38A8.3a.1
Length (nt)  3067   Chromosome Location  II: 4955646-4959842
Chromosome . Primary Identifier  II Chromosome Location . Start  4955646
Chromosome Location . End  4959842 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38A8.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006737 ulp-2 Y38A8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38A8.3a Y38A8.3a 2682   II: 4956006-4956392

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38A8.3a.1 4955646 4959842 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon48927   747   II: 4955646-4956392 Caenorhabditis elegans
Exon48929   571   II: 4956443-4957013 Caenorhabditis elegans
Exon48933   103   II: 4957065-4957167 Caenorhabditis elegans
Exon48935   121   II: 4957439-4957559 Caenorhabditis elegans
Exon48937   66   II: 4957606-4957671 Caenorhabditis elegans
Exon48940   125   II: 4957829-4957953 Caenorhabditis elegans
Exon48941   292   II: 4958003-4958294 Caenorhabditis elegans
Exon48942   129   II: 4958345-4958473 Caenorhabditis elegans
Exon48943   25   II: 4958637-4958661 Caenorhabditis elegans
Exon48945   91   II: 4958712-4958802 Caenorhabditis elegans
Exon48947   226   II: 4958850-4959075 Caenorhabditis elegans
Exon48949   273   II: 4959126-4959398 Caenorhabditis elegans
Exon48951   99   II: 4959447-4959545 Caenorhabditis elegans
Exon48953   84   II: 4959596-4959679 Caenorhabditis elegans
Exon48955   115   II: 4959728-4959842 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38A8.3a.1 4955646 4959842 -1

1 Sequence

Length
3067

1 Sequence Ontology Term

Identifier Name Description
transcript