WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27F7.2a.1 Sequence Name  T27F7.2a.1
Length (nt)  2380   Chromosome Location  II: 4972507-4988940
Chromosome . Primary Identifier  II Chromosome Location . Start  4972507
Chromosome Location . End  4988940 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27F7.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020867 shc-2 T27F7.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27F7.2a T27F7.2a 1917   II: 4972757-4972785

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27F7.2a.1 4972507 4988940 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon48963   279   II: 4972507-4972785 Caenorhabditis elegans
Exon48965   105   II: 4972855-4972959 Caenorhabditis elegans
Exon48967   340   II: 4973692-4974031 Caenorhabditis elegans
Exon48971   144   II: 4975678-4975821 Caenorhabditis elegans
Exon48975   147   II: 4978397-4978543 Caenorhabditis elegans
Exon48978   90   II: 4983479-4983568 Caenorhabditis elegans
Exon48982   122   II: 4985073-4985194 Caenorhabditis elegans
Exon48987   82   II: 4986117-4986198 Caenorhabditis elegans
Exon48992   326   II: 4987042-4987367 Caenorhabditis elegans
Exon48997   172   II: 4987622-4987793 Caenorhabditis elegans
Exon49002   192   II: 4987845-4988036 Caenorhabditis elegans
Exon49009   381   II: 4988560-4988940 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27F7.2a.1 4972507 4988940 1

1 Sequence

Length
2380

1 Sequence Ontology Term

Identifier Name Description
transcript